Scott Brainard

Scott Brainard

Tree crop genetics

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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.

Pages

Posts

Future Blog Post

less than 1 minute read

Published:

This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.

Blog Post number 4

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 3

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 2

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 1

less than 1 minute read

Published:

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

publications

A digital image-based phenotyping platform for analyzing root shape attributes in carrot

Brainard S.H., Bustamante J.A., Dawson J.C., Spalding E.P., and Goldman I.L. A Digital Image-Based Phenotyping Platform for Analyzing Root Shape Attributes in Carrot. Front Plant Sci (2021)

Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values

Brainard S.H., Ellison S.L., Simon P.W., Dawson J.C., and Goldman I.L. Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values. Theor Appl Genet (2022)

Novel QTL Associated with Rhizoctonia solani Kühn Resistance Identified in Two Table Beet x Sugar Beet F2:3 Populations Using a New Table Beet Reference Genome

Wigg K.S., Brainard S.H., Metz N., Dorn, K.M., and Goldman I.L. Novel QTL Associated with Rhizoctonia solani Kühn Resistance Identified in Two Table Beet x Sugar Beet F2:3 Populations Using a New Table Beet Reference Genome. Crop Sci (2023)

QTL mapping utilizing F2:3 linkage mapping populations reveals regions of chromosomes 2 and 6 are significantly associated with root width in carrot

Vega-Alfaro, A., Brainard, S.H., Goldman, I.L. QTL mapping utilizing F2:3 link- age mapping populations reveals regions of chromosomes 2 and 6 are significantly associated with root width in carrot. Acta Hort Under review (2023)

Form and contour: Breeding and genetics of organ shape from wild relatives to modern vegetable crops

Goldman, I.L., Vega-Alfaro, A., Brainard, S.H., McGregor, C., Oravec, M., van der Knaap, E., Wan, Y. Form and contour: Breeding and genetics of organ shape from wild relatives to modern vegetable crops. Front Plant Sci (2023)

Improving selection efficiency in C. americana × C. avellana interspecific hybrids through the development of an indel-based genetic map

Brainard, S.H., Fischbach, J.A., Braun, L.C., Dawson, J.C. Improving selection efficiency in C. americana × C. avellana interspecific hybrids through the development of an indel-based genetic map. Acta Hort (2023)

The first two chromosome-scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus

Brainard, S.H., Sanders, D.M., Bruna, T., Shengqiang, S., Dawson, J.C. The first two chromosome-scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant Biotechnol J (2024)

Linkage mapping of root shape traits associated with market class in two carrot populations

Vega, A., Brainard, S.H., Goldman, I.L. Linkage mapping of root shape traits associated with market class in two carrot populations. G3 (2024)

software

teaching

bcftools tutorial

Graduate course, HORT615: Genetic Mapping, 2021

A tutorial on how to use bcftools to filter VCF files prior to genetic mapping.